[packages/R-vsn] - new

[baggins]

commit e4e201d4fbefb4a7a698c594ad1f6c42d3aed15b
Author: Jan Rękorajski <baggins at pld-linux.org>
Date:   Thu Oct 18 13:35:18 2012 +0200

    - new

 R-vsn.spec | 65 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 65 insertions(+)
---
diff --git a/R-vsn.spec b/R-vsn.spec
new file mode 100644
index 0000000..17ccb1c
--- /dev/null
+++ b/R-vsn.spec
@@ -0,0 +1,65 @@
+%define		packname	vsn
+
+Summary:	Variance stabilization and calibration for microarray data
+Name:		R-%{packname}
+Version:	3.26.0
+Release:	1
+License:	Artistic 2.0
+Group:		Applications/Engineering
+Source0:	http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5:	dc3543c14aa178d9f7a3fa4ee45fb43c
+URL:		http://bioconductor.org/packages/release/bioc/html/%{packname}.html
+BuildRequires:	R
+BuildRequires:	R-Biobase
+BuildRequires:	R-limma
+BuildRequires:	R-affy
+BuildRequires:	texlive-latex
+Requires:	R
+Requires:	R-Biobase
+Requires:	R-limma
+Requires:	R-affy
+BuildRoot:	%{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+The package implements a method for normalising microarray
+intensities, both between colours within array, and between arrays.
+The method uses a robust variant of the maximum-likelihood estimator
+for the stochastic model of microarray data described in
+the references (see vignette). The model incorporates data calibration
+(a.k.a. normalization), a model for the dependence of the variance on
+the mean intensity, and a variance stabilizing data transformation.
+Differences between transformed intensities are analogous to
+"normalized log-ratios". However, in contrast to the latter, their
+variance is independent of the mean, and they are usually more
+sensitive and specific in detecting differential transcription.
+
+%prep
+%setup -q -c -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}
+%doc %{_libdir}/R/library/%{packname}/doc
+%doc %{_libdir}/R/library/%{packname}/html
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/CITATION
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/Meta
+%{_libdir}/R/library/%{packname}/R
+%{_libdir}/R/library/%{packname}/help
+%{_libdir}/R/library/%{packname}/data
+%{_libdir}/R/library/%{packname}/scripts
+%dir %{_libdir}/R/library/%{packname}/libs
+%attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/vsn.so
================================================================

---- gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-vsn.git/commitdiff/e4e201d4fbefb4a7a698c594ad1f6c42d3aed15b