[packages/R-BSgenome] - new

[baggins]

commit 0699c71cfedeb5bc166fefa38aa946ec38da6801
Author: Jan Rękorajski <baggins at pld-linux.org>
Date:   Fri Mar 22 12:15:15 2013 +0100

    - new

 R-BSgenome.spec | 62 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 62 insertions(+)
---
diff --git a/R-BSgenome.spec b/R-BSgenome.spec
new file mode 100644
index 0000000..94b01e0
--- /dev/null
+++ b/R-BSgenome.spec
@@ -0,0 +1,62 @@
+%define		packname	BSgenome
+
+Summary:	Infrastructure for Biostrings-based genome data packages
+Name:		R-%{packname}
+Version:	1.26.1
+Release:	1
+License:	Artistic 2.0
+Group:		Applications/Science
+Source0:	http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5:	c46bfe6388f351c7ee7a034e63fd784d
+URL:		http://bioconductor.org/packages/release/bioc/html/Biobase.html
+BuildRequires:	R
+BuildRequires:	R-BiocGenerics >= 0.3.2
+BuildRequires:	R-IRanges >= 1.13.6
+BuildRequires:	R-GenomicRanges >= 1.7.5
+BuildRequires:	R-Biostrings >= 2.23.3
+BuildRequires:	texlive-latex
+Requires:	R
+Requires:	R-BiocGenerics >= 0.3.2
+Requires:	R-IRanges >= 1.13.6
+Requires:	R-GenomicRanges >= 1.7.5
+Requires:	R-Biostrings >= 2.23.3
+BuildRoot:	%{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Infrastructure shared by all the Biostrings-based genome data packages.
+
+%prep
+%setup -c -q -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/libs/
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/UnitTests/
+%{_libdir}/R/library/%{packname}/data
+%{_libdir}/R/library/%{packname}/scripts
+%{_libdir}/R/library/%{packname}/ExpressionSet
+%{_libdir}/R/library/%{packname}/CITATION
+%{_libdir}/R/library/%{packname}/Code
+%{_libdir}/R/library/%{packname}/extdata
+%{_libdir}/R/library/%{packname}/testClass.R
+%{_libdir}/R/library/%{packname}/NEWS
+%doc %{_libdir}/R/library/%{packname}/doc
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/html
================================================================

---- gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-BSgenome.git/commitdiff/0699c71cfedeb5bc166fefa38aa946ec38da6801