[packages/CHOLMOD] - updated to 2.1.1 - updated ufconfig,shared patches
qboosh
qboosh at pld-linux.org
Sat Apr 20 08:41:15 CEST 2013
commit 15cc76d53211f6d0878f067bf9ca15df851f97da
Author: Jakub Bogusz <qboosh at pld-linux.org>
Date: Sat Apr 20 08:41:02 2013 +0200
- updated to 2.1.1
- updated ufconfig,shared patches
CHOLMOD-shared.patch | 157 +++++++++++++++++++++++++++++--------------------
CHOLMOD-ufconfig.patch | 66 +++++++++++++--------
CHOLMOD.spec | 6 +-
3 files changed, 136 insertions(+), 93 deletions(-)
---
diff --git a/CHOLMOD.spec b/CHOLMOD.spec
index bcae7ce..6b77594 100644
--- a/CHOLMOD.spec
+++ b/CHOLMOD.spec
@@ -5,12 +5,12 @@
Summary: CHOLMOD: sparse supernodal Cholesky factorization and update/downdate
Summary(pl.UTF-8): CHOLMOD - rzadki wielowęzłowy rozkład Cholesky'ego z poprawianiem
Name: CHOLMOD
-Version: 2.1.0
+Version: 2.1.1
Release: 1
License: GPL v2+ (some parts LGPL v2.1+)
Group: Libraries
Source0: http://www.cise.ufl.edu/research/sparse/cholmod/%{name}-%{version}.tar.gz
-# Source0-md5: 9bc275f9117c3e3a6c4f23c29fd01761
+# Source0-md5: 3b9a68ebc60825a6f3cd5f5fa5930de8
Patch0: %{name}-ufconfig.patch
Patch1: %{name}-shared.patch
# http://www.cise.ufl.edu/research/sparse/cholmod/metis.patch (for METIS 5)
@@ -82,7 +82,6 @@ Statyczna biblioteka CHOLMOD.
%{__make} \
CC="%{__cc}" \
%{?with_metis:WITH_METIS=1} \
- %{!?with_metis:PARTITION= LPARTITION=} \
CFLAGS="%{rpmcflags}" \
LDFLAGS="%{rpmldflags}" \
libdir=%{_libdir}
@@ -93,7 +92,6 @@ install -d $RPM_BUILD_ROOT%{_includedir}/cholmod
%{__make} -C Lib install \
DESTDIR=$RPM_BUILD_ROOT \
- %{!?with_metis:PARTITION= LPARTITION=} \
libdir=%{_libdir}
install Include/*.h $RPM_BUILD_ROOT%{_includedir}/cholmod
diff --git a/CHOLMOD-shared.patch b/CHOLMOD-shared.patch
index 4b64dbe..8148d67 100644
--- a/CHOLMOD-shared.patch
+++ b/CHOLMOD-shared.patch
@@ -1,28 +1,45 @@
---- CHOLMOD/Demo/Makefile.orig 2012-08-28 19:15:59.367085674 +0200
-+++ CHOLMOD/Demo/Makefile 2012-08-28 19:27:39.750404409 +0200
-@@ -16,24 +16,17 @@
- CONFIG = -DNPARTITION
- # check if METIS is requested and available
- ifeq (,$(findstring -DNPARTITION, $(CHOLMOD_CONFIG)))
-- # METIS is requested. See if it is available
-- ifeq ($(METIS_PATH), $(wildcard $(METIS_PATH)))
-- ifeq (../../CAMD, $(wildcard ../../CAMD))
-- ifeq (../../CCOLAMD, $(wildcard ../../CCOLAMD))
-- # METIS, CAMD, and CCOLAMD are available
-- LIB_WITH_PARTITION = $(METIS) ../../CCOLAMD/Lib/libccolamd.a \
-- ../../CAMD/Lib/libcamd.a
-- I_WITH_PARTITION = -I$(METIS_PATH)/Lib \
-- -I../../CCOLAMD/Include -I../../CAMD/Include
-+ # METIS is requested.
-+ ifeq ($(WITH_METIS), 1)
-+ LIB_WITH_PARTITION = -lmetis -lccolamd -lcamd
-+ I_WITH_PARTITION = -I/usr/include/metis \
-+ -I/usr/include/ccolamd -I/usr/include/camd
- CONFIG =
-- endif
+--- CHOLMOD/Demo/Makefile.orig 2013-04-20 07:49:10.121084286 +0200
++++ CHOLMOD/Demo/Makefile 2013-04-20 08:00:24.634389311 +0200
+@@ -14,38 +14,30 @@
+ # CAMD and CCOLAMD can be installed without METIS, but are optional.
+ I_WITH_PARTITION =
+ LIB_WITH_PARTITION =
+-CONFIG = -DNPARTITION -DNCAMD
++CONFIG = -DNPARTITION
+ # check if CAMD/CCOLAMD and METIS are requested and available
+ ifeq (,$(findstring -DNCAMD, $(CHOLMOD_CONFIG)))
+- # CAMD and CCOLAMD are requested. See if they are available
+- ifeq (../../CAMD, $(wildcard ../../CAMD))
+- ifeq (../../CCOLAMD, $(wildcard ../../CCOLAMD))
++ # CAMD and CCOLAMD are requested. Assume they are available
+ # CAMD and CCOLAMD are requested and available
+ LIB_WITH_PARTITION = \
+- ../../CCOLAMD/Lib/libccolamd.a ../../CAMD/Lib/libcamd.a
++ -lccolamd -lcamd
+ I_WITH_PARTITION = \
+- -I../../CCOLAMD/Include -I../../CAMD/Include
++ -I/usr/include/ccolamd -I/usr/include/camd
+ CONFIG = -DNPARTITION
+ # check if METIS is requested and available
+ ifeq (,$(findstring -DNPARTITION, $(CHOLMOD_CONFIG)))
+- # METIS is requested. See if it is available
+- ifeq ($(METIS_PATH), $(wildcard $(METIS_PATH)))
++ # METIS is requested. Assume it is available
+ # METIS is available
+- LIB_WITH_PARTITION = $(METIS) \
+- ../../CCOLAMD/Lib/libccolamd.a ../../CAMD/Lib/libcamd.a
+- I_WITH_PARTITION = -I$(METIS_PATH)/Lib \
+- -I../../CCOLAMD/Include -I../../CAMD/Include
++ LIB_WITH_PARTITION = -lmetis -lccolamd -lcamd
++ I_WITH_PARTITION = -I/usr/include/metis \
++ -I/usr/include/ccolamd -I/usr/include/camd
+ CONFIG =
+- endif
+ endif
- endif
- endif
+- endif
endif
+
#-------------------------------------------------------------------------------
-LIB2 = ../Lib/libcholmod.a ../../AMD/Lib/libamd.a ../../COLAMD/Lib/libcolamd.a \
@@ -31,7 +48,7 @@
$(LIB_WITH_PARTITION) $(LAPACK) $(BLAS) $(XERBLA) $(LIB)
#-------------------------------------------------------------------------------
-@@ -75,35 +68,25 @@
+@@ -88,39 +80,26 @@
#-------------------------------------------------------------------------------
# See below if you compile with -DNPARTITION
library:
@@ -40,12 +57,16 @@
( cd ../Lib ; $(MAKE) )
- ( cd ../../AMD ; $(MAKE) library )
- ( cd ../../COLAMD ; $(MAKE) library )
--ifneq (,$(findstring -DNPARTITION, $(CONFIG)))
+-ifneq (,$(findstring -DCAMD, $(CONFIG)))
-else
- ( cd ../../CCOLAMD ; $(MAKE) library )
- ( cd ../../CAMD ; $(MAKE) library )
+-endif
+-ifneq (,$(findstring -DNPARTITION, $(CONFIG)))
+-else
- ( cd $(METIS_PATH) && $(MAKE) )
-endif
+
#-------------------------------------------------------------------------------
I = -I../Include
@@ -68,14 +89,14 @@
readhb2: readhb2.f
- $(F77) $(FFLAGS) -O -o readhb2 readhb2.f
-+ $(F77) $(LDFLAGS) $(FFLAGS) -O -o readhb2 readhb2.f
++ $(F77) $(LDFLAGS) -O $(FFLAGS) -o readhb2 readhb2.f
reade: reade.f
- $(F77) $(FFLAGS) -O -o reade reade.f
-+ $(F77) $(LDFLAGS) $(FFLAGS) -O -o reade reade.f
---- CHOLMOD/Lib/Makefile.orig 2012-08-28 19:15:59.367085674 +0200
-+++ CHOLMOD/Lib/Makefile 2012-08-28 19:15:59.397085673 +0200
-@@ -33,14 +33,14 @@
++ $(F77) $(LDFLAGS) -O $(FFLAGS) -o reade reade.f
+--- CHOLMOD/Lib/Makefile.orig 2013-04-20 07:45:02.304428018 +0200
++++ CHOLMOD/Lib/Makefile 2013-04-20 07:48:37.427752323 +0200
+@@ -43,14 +43,14 @@
C = $(CC) $(CF) $(CHOLMOD_CONFIG) $(CONFIG)
@@ -93,7 +114,7 @@
clean:
- $(RM) $(CLEAN)
-@@ -132,9 +132,13 @@
+@@ -144,9 +144,13 @@
# to compile just the double/int version, use OBJ = $(DI)
OBJ = $(DI) $(DL)
@@ -110,7 +131,7 @@
$(OBJ): $(INC)
-@@ -143,24 +147,24 @@
+@@ -155,24 +159,24 @@
#-------------------------------------------------------------------------------
cholmod_check.o: ../Check/cholmod_check.c
@@ -141,128 +162,136 @@
#-------------------------------------------------------------------------------
-@@ -168,92 +172,92 @@
+@@ -180,98 +184,98 @@
#-------------------------------------------------------------------------------
cholmod_common.o: ../Core/cholmod_common.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
cholmod_dense.o: ../Core/cholmod_dense.c ../Core/t_cholmod_dense.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
cholmod_factor.o: ../Core/cholmod_factor.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
cholmod_change_factor.o: ../Core/cholmod_change_factor.c \
../Core/t_cholmod_change_factor.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
cholmod_memory.o: ../Core/cholmod_memory.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
cholmod_sparse.o: ../Core/cholmod_sparse.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
cholmod_complex.o: ../Core/cholmod_complex.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
cholmod_transpose.o: ../Core/cholmod_transpose.c ../Core/t_cholmod_transpose.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
cholmod_band.o: ../Core/cholmod_band.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
cholmod_copy.o: ../Core/cholmod_copy.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
cholmod_triplet.o: ../Core/cholmod_triplet.c ../Core/t_cholmod_triplet.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
cholmod_error.o: ../Core/cholmod_error.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
cholmod_aat.o: ../Core/cholmod_aat.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
cholmod_add.o: ../Core/cholmod_add.c
- $(C) -c $(I) $<
-+ libtool --tag=CC --mode=compile $(C) $(I) -c $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
+
+ cholmod_version.o: ../Core/cholmod_version.c
+- $(C) -c $(I) $<
++ libtool --tag=CC --mode=compile $(C) -c $(I) $<
#-------------------------------------------------------------------------------
cholmod_l_common.o: ../Core/cholmod_common.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
cholmod_l_dense.o: ../Core/cholmod_dense.c ../Core/t_cholmod_dense.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
cholmod_l_factor.o: ../Core/cholmod_factor.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
cholmod_l_change_factor.o: ../Core/cholmod_change_factor.c \
../Core/t_cholmod_change_factor.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
cholmod_l_memory.o: ../Core/cholmod_memory.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
cholmod_l_sparse.o: ../Core/cholmod_sparse.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
cholmod_l_complex.o: ../Core/cholmod_complex.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
cholmod_l_transpose.o: ../Core/cholmod_transpose.c ../Core/t_cholmod_transpose.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
cholmod_l_band.o: ../Core/cholmod_band.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
cholmod_l_copy.o: ../Core/cholmod_copy.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
cholmod_l_triplet.o: ../Core/cholmod_triplet.c ../Core/t_cholmod_triplet.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
cholmod_l_error.o: ../Core/cholmod_error.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
cholmod_l_aat.o: ../Core/cholmod_aat.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
cholmod_l_add.o: ../Core/cholmod_add.c
- $(C) -DDLONG -c $(I) $< -o $@
-+ libtool --tag=CC --mode=compile $(C) -DDLONG $(I) -c $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
+
+ cholmod_l_version.o: ../Core/cholmod_version.c
+- $(C) -DDLONG -c $(I) $< -o $@
++ libtool --tag=CC --mode=compile $(C) -DDLONG -c $(I) $< -o $@
#-------------------------------------------------------------------------------
-@@ -261,116 +265,116 @@
+@@ -279,116 +283,116 @@
#-------------------------------------------------------------------------------
cholmod_amd.o: ../Cholesky/cholmod_amd.c
@@ -413,7 +442,7 @@
#-------------------------------------------------------------------------------
-@@ -378,88 +382,88 @@
+@@ -396,88 +400,88 @@
#-------------------------------------------------------------------------------
cholmod_horzcat.o: ../MatrixOps/cholmod_horzcat.c
@@ -526,7 +555,7 @@
#-------------------------------------------------------------------------------
-@@ -469,24 +473,24 @@
+@@ -487,24 +491,24 @@
cholmod_super_numeric.o: ../Supernodal/cholmod_super_numeric.c \
../Supernodal/t_cholmod_gpu.c \
../Supernodal/t_cholmod_super_numeric.c
diff --git a/CHOLMOD-ufconfig.patch b/CHOLMOD-ufconfig.patch
index e68f4bd..e70aa78 100644
--- a/CHOLMOD-ufconfig.patch
+++ b/CHOLMOD-ufconfig.patch
@@ -53,9 +53,9 @@ diff -ur CHOLMOD/Include/cholmod_internal.h CHOLMOD-uf/Include/cholmod_internal.
/* -------------------------------------------------------------------------- */
/* Size_max: the largest value of size_t */
---- CHOLMOD/Lib/Makefile.orig 2012-06-21 07:35:19.000000000 +0200
-+++ CHOLMOD/Lib/Makefile 2012-08-28 19:15:04.193753493 +0200
-@@ -6,7 +6,7 @@
+--- CHOLMOD/Lib/Makefile.orig 2013-04-15 22:11:51.000000000 +0200
++++ CHOLMOD/Lib/Makefile 2013-04-20 07:40:54.087771768 +0200
+@@ -6,45 +6,38 @@
ccode: all
@@ -63,30 +63,46 @@ diff -ur CHOLMOD/Include/cholmod_internal.h CHOLMOD-uf/Include/cholmod_internal.
+include /usr/share/misc/SuiteSparse_config.mk
#-------------------------------------------------------------------------------
- # the optional Partition module requires METIS, CAMD, and CCOLAMD
-@@ -15,24 +15,19 @@
- CONFIG = -DNPARTITION
- # check if METIS is requested and available
- ifeq (,$(findstring -DNPARTITION, $(CHOLMOD_CONFIG)))
-- # METIS is requested. See if it is available
-- ifeq ($(METIS_PATH), $(wildcard $(METIS_PATH)))
-- ifeq (../../CAMD, $(wildcard ../../CAMD))
-- ifeq (../../CCOLAMD, $(wildcard ../../CCOLAMD))
-+ # METIS is requested.
-+ ifeq ($(WITH_METIS), 1)
- # METIS, CAMD, and CCOLAMD are available
-- LIB_WITH_PARTITION = $(METIS) ../../CCOLAMD/Lib/libccolamd.a \
-- ../../CAMD/Lib/libcamd.a
-- I_WITH_PARTITION = -I$(METIS_PATH)/Lib \
-- -I../../CCOLAMD/Include -I../../CAMD/Include
-+ LIB_WITH_PARTITION = -lmetis -lccolamd -lcamd
-+ I_WITH_PARTITION = -I/usr/include/metis \
-+ -I/usr/include/ccolamd -I/usr/include/camd
- CONFIG =
-- endif
+ # the optional Partition module requires METIS, CAMD, and CCOLAMD.
+ # CAMD and CCOLAMD can be installed without METIS, but are optional.
+ I_WITH_PARTITION =
+ LIB_WITH_PARTITION =
+-CONFIG = -DNPARTITION -DNCAMD
++CONFIG = -DNPARTITION
+ # check if CAMD/CCOLAMD and METIS are requested and available
+ ifeq (,$(findstring -DNCAMD, $(CHOLMOD_CONFIG)))
+- # CAMD and CCOLAMD are requested. See if they are available
+- ifeq (../../CAMD, $(wildcard ../../CAMD))
+- ifeq (../../CCOLAMD, $(wildcard ../../CCOLAMD))
++ # CAMD and CCOLAMD are requested. Assume they are available
+ # CAMD and CCOLAMD are requested and available
+ LIB_WITH_PARTITION = \
+- ../../CCOLAMD/Lib/libccolamd.a ../../CAMD/Lib/libcamd.a
++ -lccolamd -lcamd
+ I_WITH_PARTITION = \
+- -I../../CCOLAMD/Include -I../../CAMD/Include
++ -I/usr/include/ccolamd -I/usr/include/camd
+ CONFIG = -DNPARTITION
+ # check if METIS is requested and available
+ ifeq (,$(findstring -DNPARTITION, $(CHOLMOD_CONFIG)))
+- # METIS is requested. See if it is available
+- ifeq ($(METIS_PATH), $(wildcard $(METIS_PATH)))
++ # METIS is requested. Assume it is available
+ # METIS is available
+- LIB_WITH_PARTITION = $(METIS) \
+- ../../CCOLAMD/Lib/libccolamd.a ../../CAMD/Lib/libcamd.a
+- I_WITH_PARTITION = -I$(METIS_PATH)/Lib \
+- -I../../CCOLAMD/Include -I../../CAMD/Include
++ LIB_WITH_PARTITION = -lmetis -lccolamd -lcamd
++ I_WITH_PARTITION = -I/usr/include/metis \
++ -I/usr/include/ccolamd -I/usr/include/camd
+ CONFIG =
+- endif
+ endif
- endif
- endif
+- endif
endif
+
#-------------------------------------------------------------------------------
-I = -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include \
================================================================
---- gitweb:
http://git.pld-linux.org/gitweb.cgi/packages/CHOLMOD.git/commitdiff/15cc76d53211f6d0878f067bf9ca15df851f97da
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