[packages/R-DESeq] - new

[baggins]

commit 9071c8bd2d720700f0db539e60485877dd459497
Author: Jan Rękorajski <baggins at pld-linux.org>
Date:   Fri May 10 13:53:26 2013 +0200

    - new

 R-DESeq.spec | 62 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 62 insertions(+)
---
diff --git a/R-DESeq.spec b/R-DESeq.spec
new file mode 100644
index 0000000..689d450
--- /dev/null
+++ b/R-DESeq.spec
@@ -0,0 +1,62 @@
+%define		packname	DESeq
+
+Summary:	Differential gene expression analysis based on the negative binomial distribution
+Name:		R-%{packname}
+Version:	1.12.0
+Release:	1
+License:	GPL v3
+Group:		Applications/Engineering
+Source0:	http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5:	8743c9b97e61e6a65b8815f6c1c6c20a
+URL:		http://bioconductor.org/packages/release/bioc/html/%{packname}.html
+BuildRequires:	R
+BuildRequires:	R-Biobase
+BuildRequires:	R-cran-locfit
+BuildRequires:	R-genefilter
+BuildRequires:	R-geneplotter
+BuildRequires:	R-cran-RColorBrewer
+BuildRequires:	texlive-latex
+Requires:	R
+Requires:	R-Biobase
+Requires:	R-cran-locfit
+Requires:	R-genefilter
+Requires:	R-geneplotter
+Requires:	R-cran-RColorBrewer
+BuildRoot:	%{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Estimate variance-mean dependence in count data from high-throughput
+sequencing assays and test for differential expression based on a
+model using the negative binomial distribution.
+
+%prep
+%setup -q -c -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}
+%doc %{_libdir}/R/library/%{packname}/doc
+%doc %{_libdir}/R/library/%{packname}/html
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/Meta
+%{_libdir}/R/library/%{packname}/R
+%{_libdir}/R/library/%{packname}/help
+%{_libdir}/R/library/%{packname}/extra
+%{_libdir}/R/library/%{packname}/scripts
+%{_libdir}/R/library/%{packname}/CITATION
+%dir %{_libdir}/R/library/%{packname}/libs
+%attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/%{packname}.so
================================================================

---- gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-DESeq.git/commitdiff/9071c8bd2d720700f0db539e60485877dd459497