[packages/R-rtracklayer] - up to 1.22.0

[baggins]

commit dedeb3e4d2a39837b53e10159b72ee71300cd7b2
Author: Jan Rękorajski <baggins at pld-linux.org>
Date:   Tue Nov 26 13:40:49 2013 +0100

    - up to 1.22.0

 R-rtracklayer.spec |  6 +++---
 bogus-deps.patch   | 12 ++++++------
 2 files changed, 9 insertions(+), 9 deletions(-)
---
diff --git a/R-rtracklayer.spec b/R-rtracklayer.spec
index 98949c9..97cfd56 100644
--- a/R-rtracklayer.spec
+++ b/R-rtracklayer.spec
@@ -2,14 +2,14 @@
 
 Summary:	R interface to genome browsers and their annotation tracks
 Name:		R-%{packname}
-Version:	1.20.2
+Version:	1.22.0
 Release:	1
 License:	Artistic 2.0
 Group:		Applications/Engineering
 Source0:	http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
-# Source0-md5:	04d4c40bba7adb50721c6ad256c854a7
+# Source0-md5:	1dad994b4779769e935902e9c8384959
 Patch0:		bogus-deps.patch
-URL:		http://www.bioconductor.org/packages/2.12/bioc/html/rtracklayer.html
+URL:		http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html
 BuildRequires:	R
 BuildRequires:	R-GenomicRanges >= 1.11.12
 BuildRequires:	R-BSgenome
diff --git a/bogus-deps.patch b/bogus-deps.patch
index 9bf0a49..849ce2e 100644
--- a/bogus-deps.patch
+++ b/bogus-deps.patch
@@ -1,14 +1,14 @@
 --- rtracklayer/rtracklayer/DESCRIPTION~	2013-05-04 06:57:13.000000000 +0200
 +++ rtracklayer/rtracklayer/DESCRIPTION	2013-05-10 14:37:24.622975892 +0200
 @@ -5,7 +5,7 @@
- Depends: R (>= 2.10), methods, GenomicRanges (>= 1.11.12)
- Imports: XML (>= 1.98-0), BiocGenerics (>= 0.1.0), IRanges (>=
-         1.15.37), GenomicRanges, Biostrings (>= 2.25.6), BSgenome (>=
--        1.23.1), zlibbioc, RCurl (>= 1.4-2), Rsamtools (>= 1.7.3)
-+        1.23.1), RCurl (>= 1.4-2), Rsamtools (>= 1.7.3)
+ Depends: R (>= 2.10), methods, GenomicRanges (>= 1.13.3)
+ Imports: XML (>= 1.98-0), BiocGenerics (>= 0.7.7), IRanges (>=
+         1.19.34), XVector (>= 0.1.3), GenomicRanges (>= 1.13.43),
+-        Biostrings (>= 2.29.18), BSgenome (>= 1.23.1), zlibbioc, RCurl
++        Biostrings (>= 2.29.18), BSgenome (>= 1.23.1), RCurl
+         (>= 1.4-2), Rsamtools (>= 1.13.1)
  Suggests: humanStemCell, microRNA (>= 1.1.1), genefilter, limma,
          org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19,
-         TxDb.Hsapiens.UCSC.hg19.knownGene, hgu133plus2.db
 --- rtracklayer/rtracklayer/NAMESPACE~	2013-05-04 02:02:40.000000000 +0200
 +++ rtracklayer/rtracklayer/NAMESPACE	2013-05-10 14:37:38.086445477 +0200
 @@ -1,7 +1,5 @@
================================================================

---- gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-rtracklayer.git/commitdiff/dedeb3e4d2a39837b53e10159b72ee71300cd7b2