[packages/R-affy] Rel 2

[arekm]

commit 7cc31e550ca7ce75769cec46d2248bdb2240b793
Author: Arkadiusz Miśkiewicz <arekm at maven.pl>
Date:   Sun Apr 5 20:11:56 2026 +0200

    Rel 2

 R-affy.spec      |  8 +++-----
 bogus-deps.patch | 33 ---------------------------------
 2 files changed, 3 insertions(+), 38 deletions(-)
---
diff --git a/R-affy.spec b/R-affy.spec
index 88400ba..551432a 100644
--- a/R-affy.spec
+++ b/R-affy.spec
@@ -3,13 +3,12 @@
 Summary:	Methods for Affymetrix Oligonucleotide Arrays
 Name:		R-%{packname}
 Version:	1.88.0
-Release:	1
+Release:	2
 License:	LGPL v2+
 Group:		Applications/Engineering
-Source0:	http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+Source0:	https://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
 # Source0-md5:	85a03c51a040597094ab24e8067e5830
-Patch0:		bogus-deps.patch
-URL:		http://bioconductor.org/packages/release/bioc/html/affy.html
+URL:		https://bioconductor.org/packages/release/bioc/html/affy.html
 BuildRequires:	R
 BuildRequires:	R-Biobase
 BuildRequires:	R-BiocGenerics
@@ -35,7 +34,6 @@ The dependancy to tkWidgets only concerns few convenience functions.
 
 %prep
 %setup -q -c -n %{packname}
-%patch -P0 -p1
 
 %build
 
diff --git a/bogus-deps.patch b/bogus-deps.patch
deleted file mode 100644
index 4012f7a..0000000
--- a/bogus-deps.patch
+++ /dev/null
@@ -1,33 +0,0 @@
---- affy/affy/DESCRIPTION.orig	2012-10-17 14:49:59.956583161 +0200
-+++ affy/affy/DESCRIPTION	2012-10-17 14:51:23.219913557 +0200
-@@ -12,8 +12,8 @@
-         Christopher Workman <workman at cbs.dtu.dk>, John Zhang
- Maintainer: Rafael A. Irizarry <rafa at jhu.edu>
- Depends: R (>= 2.8.0), BiocGenerics (>= 0.1.12), Biobase (>= 2.5.5)
--Imports: affyio (>= 1.13.3), BiocInstaller, graphics, grDevices,
--        methods, preprocessCore, stats, utils, zlibbioc
-+Imports: affyio (>= 1.13.3), graphics, grDevices,
-+        methods, preprocessCore, stats, utils
- Suggests: tkWidgets (>= 1.19.0), affydata, widgetTools
- LinkingTo: preprocessCore
- Description: The package contains functions for exploratory
---- affy/affy/NAMESPACE.orig	2012-10-02 00:51:49.000000000 +0200
-+++ affy/affy/NAMESPACE	2012-10-17 14:50:58.656581090 +0200
-@@ -4,8 +4,6 @@
- 
- import(affyio)
- 
--import(zlibbioc)
--
- importClassesFrom(Biobase, AnnotatedDataFrame, AssayData, eSet, MIAME,
-                   Versioned, VersionedBiobase, Versions)
- 
-@@ -28,8 +26,6 @@
-            assayDataNew, multiassign, read.AnnotatedDataFrame,
-            read.MIAME, testBioCConnection)
- 
--importFrom(BiocInstaller, biocinstallRepos)
--
- importFrom(graphics, abline, axis, barplot, frame, hist,
-            lines, matplot, mtext, pairs, par, plot, points,
-            smoothScatter, text)
================================================================

---- gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-affy.git/commitdiff/7cc31e550ca7ce75769cec46d2248bdb2240b793