[packages/R-rtracklayer] Rel 2

arekm arekm at pld-linux.org
Sun Apr 5 23:09:00 CEST 2026


commit 0c8b7205b2b292e6a5e51ea6e2e376c8cb2b9b2d
Author: Arkadiusz Miśkiewicz <arekm at maven.pl>
Date:   Sun Apr 5 23:07:04 2026 +0200

    Rel 2

 R-rtracklayer.spec |  4 +---
 bogus-deps.patch   | 21 ---------------------
 2 files changed, 1 insertion(+), 24 deletions(-)
---
diff --git a/R-rtracklayer.spec b/R-rtracklayer.spec
index c2f6a31..1ba2928 100644
--- a/R-rtracklayer.spec
+++ b/R-rtracklayer.spec
@@ -3,12 +3,11 @@
 Summary:	R interface to genome browsers and their annotation tracks
 Name:		R-%{packname}
 Version:	1.70.1
-Release:	1
+Release:	2
 License:	Artistic 2.0
 Group:		Applications/Engineering
 Source0:	https://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
 # Source0-md5:	c399624f0938456f2c31d5f58112b529
-Patch0:		bogus-deps.patch
 URL:		https://bioconductor.org/packages/release/bioc/html/rtracklayer.html
 BuildRequires:	R
 BuildRequires:	R-cran-XML
@@ -35,7 +34,6 @@ state, such as the current viewport.
 
 %prep
 %setup -q -c -n %{packname}
-%patch -P0 -p1
 
 %build
 
diff --git a/bogus-deps.patch b/bogus-deps.patch
deleted file mode 100644
index 849ce2e..0000000
--- a/bogus-deps.patch
+++ /dev/null
@@ -1,21 +0,0 @@
---- rtracklayer/rtracklayer/DESCRIPTION~	2013-05-04 06:57:13.000000000 +0200
-+++ rtracklayer/rtracklayer/DESCRIPTION	2013-05-10 14:37:24.622975892 +0200
-@@ -5,7 +5,7 @@
- Depends: R (>= 2.10), methods, GenomicRanges (>= 1.13.3)
- Imports: XML (>= 1.98-0), BiocGenerics (>= 0.7.7), IRanges (>=
-         1.19.34), XVector (>= 0.1.3), GenomicRanges (>= 1.13.43),
--        Biostrings (>= 2.29.18), BSgenome (>= 1.23.1), zlibbioc, RCurl
-+        Biostrings (>= 2.29.18), BSgenome (>= 1.23.1), RCurl
-         (>= 1.4-2), Rsamtools (>= 1.13.1)
- Suggests: humanStemCell, microRNA (>= 1.1.1), genefilter, limma,
-         org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19,
---- rtracklayer/rtracklayer/NAMESPACE~	2013-05-04 02:02:40.000000000 +0200
-+++ rtracklayer/rtracklayer/NAMESPACE	2013-05-10 14:37:38.086445477 +0200
-@@ -1,7 +1,5 @@
- useDynLib(rtracklayer, .registration = TRUE)
- 
--import(zlibbioc)
--
- importFrom("stats", offset)
- 
- importFrom("XML", getNodeSet, xmlValue, xmlAttrs, htmlTreeParse,
================================================================

---- gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-rtracklayer.git/commitdiff/0c8b7205b2b292e6a5e51ea6e2e376c8cb2b9b2d



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