packages: MACS/MACS.spec (NEW) - new

[baggins]

Author: baggins                      Date: Wed Nov 16 10:38:45 2011 GMT
Module: packages                      Tag: HEAD
---- Log message:
- new

---- Files affected:
packages/MACS:
   MACS.spec (NONE -> 1.1)  (NEW)

---- Diffs:

================================================================
Index: packages/MACS/MACS.spec
diff -u /dev/null packages/MACS/MACS.spec:1.1
--- /dev/null	Wed Nov 16 11:38:45 2011
+++ packages/MACS/MACS.spec	Wed Nov 16 11:38:40 2011
@@ -0,0 +1,81 @@
+# $Revision$, $Date$
+Summary:	Model-based Analysis for ChIP-Seq 
+#Summary(pl.UTF-8):	-
+Name:		MACS
+Version:	1.4.1
+Release:	1
+License:	Artistic
+Group:		Development/Languages/Python
+# user and password are "publicly" visible on the web page (ROT13)
+Source0:	http://macs:chipseq@liulab.dfci.harvard.edu/MACS/src/%{name}-%{version}.tar.gz
+# Source0-md5:	0b6490e37265d485e387b8323e810d3d
+URL:		http://liulab.dfci.harvard.edu/MACS/
+BuildRequires:	python-distribute
+BuildRequires:	rpm-pythonprov
+BuildRequires:	rpmbuild(macros) >= 1.219
+Requires:		python-modules
+BuildArch:	noarch
+BuildRoot:	%{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Next generation parallel sequencing technologies made chromatin
+immunoprecipitation followed by sequencing (ChIP-Seq) a popular
+strategy to study genome-wide protein-DNA interactions, while
+creating challenges for analysis algorithms. We present Model-based
+Analysis of ChIP-Seq (MACS) on short reads sequencers such as Genome
+Analyzer (Illumina / Solexa). MACS empirically models the length of
+the sequenced ChIP fragments, which tends to be shorter than
+sonication or library construction size estimates, and uses it
+to improve the spatial resolution of predicted binding sites.
+MACS also uses a dynamic Poisson distribution to effectively capture
+local biases in the genome sequence, allowing for more sensitive and
+robust prediction. MACS compares favorably to existing ChIP-Seq
+peak-finding algorithms, is publicly available open source, and can be
+used for ChIP-Seq with or without control samples.
+
+#%description -l pl.UTF-8
+
+%prep
+%setup -q
+
+# fix #!/usr/bin/env python -> #!/usr/bin/python:
+%{__sed} -i -e '1s,^#!.*python,#!%{__python},' bin/* setup.py
+
+%build
+%{__python} setup.py build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+%{__python} setup.py install \
+	--skip-build \
+	--optimize=2 \
+	--root=$RPM_BUILD_ROOT
+
+%py_ocomp $RPM_BUILD_ROOT%{py_sitescriptdir}
+%py_comp $RPM_BUILD_ROOT%{py_sitescriptdir}
+%py_postclean
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc ChangeLog NEW_IN_MACS14 README
+%attr(755,root,root) %{_bindir}/*
+%dir %{py_sitescriptdir}/MACS14
+%dir %{py_sitescriptdir}/MACS14/IO
+%{py_sitescriptdir}/MACS14/*.py[co]
+%{py_sitescriptdir}/MACS14/IO/*.py[co]
+%if "%{py_ver}" > "2.4"
+%{py_sitescriptdir}/MACS-*.egg-info
+%endif
+
+%define date	%(echo `LC_ALL="C" date +"%a %b %d %Y"`)
+%changelog
+* %{date} PLD Team <feedback at pld-linux.org>
+All persons listed below can be reached at <cvs_login>@pld-linux.org
+
+$Log$
+Revision 1.1  2011/11/16 10:38:40  baggins
+- new
+
================================================================