[packages/avogadro] - rel 3; better cmake fix; mkspecs fixed in cmake directly

[arekm]

commit ee72a804d3bb2db1017f7d685b71012111afdff1
Author: Arkadiusz Miśkiewicz <arekm at maven.pl>
Date:   Sat Aug 25 22:36:14 2012 +0200

    - rel 3; better cmake fix; mkspecs fixed in cmake directly

 avogadro-cmake.patch | 40 ++++++++++++++++++++++++----------------
 avogadro.spec        |  4 +---
 2 files changed, 25 insertions(+), 19 deletions(-)
---
diff --git a/avogadro.spec b/avogadro.spec
index 9760279..8a5bf9f 100644
--- a/avogadro.spec
+++ b/avogadro.spec
@@ -1,7 +1,7 @@
 Summary:	An advanced molecular editor for chemical purposes
 Name:		avogadro
 Version:	1.0.3
-Release:	2
+Release:	3
 License:	GPL v2
 Group:		Applications/Editors
 Source0:	http://downloads.sourceforge.net/avogadro/%{name}-%{version}.tar.bz2
@@ -76,8 +76,6 @@ install -d $RPM_BUILD_ROOT%{_datadir}/qt4/mkspecs/features
 %{__make} -C build install \
 	DESTDIR=$RPM_BUILD_ROOT
 
-%{__mv} $RPM_BUILD_ROOT{%{_prefix},%{_datadir}/qt4/mkspecs}/features/avogadro.prf
-
 %post libs -p /sbin/ldconfig
 %postun libs -p /sbin/ldconfig
 
diff --git a/avogadro-cmake.patch b/avogadro-cmake.patch
index 741dc6d..63f8904 100644
--- a/avogadro-cmake.patch
+++ b/avogadro-cmake.patch
@@ -1,16 +1,24 @@
---- avogadro-1.0.0/cmake/modules/AvogadroConfig.cmake.in~	2009-10-23 21:06:32.000000000 +0200
-+++ avogadro-1.0.0/cmake/modules/AvogadroConfig.cmake.in	2010-07-31 09:34:49.143410698 +0200
-@@ -13,10 +13,10 @@
- 
- set(Avogadro_INSTALL_PREFIX  "@CMAKE_INSTALL_PREFIX@")
- set(Avogadro_INCLUDE_DIRS    "@CMAKE_INSTALL_PREFIX@/include")
--set(Avogadro_LIBRARY_DIRS    "@CMAKE_INSTALL_PREFIX@/@LIB_INSTALL_DIR@")
-+set(Avogadro_LIBRARY_DIRS    "@LIB_INSTALL_DIR@")
- set(Avogadro_LIB_SUFFIX      "@LIB_SUFFIX@")
--set(Avogadro_PLUGIN_DIR      "@CMAKE_INSTALL_PREFIX@/@Avogadro_PLUGIN_INSTALL_DIR@")
--set(Avogadro_BIN_DIRS        "@CMAKE_INSTALL_PREFIX@/@BIN_INSTALL_DIR@")
-+set(Avogadro_PLUGIN_DIR      "@Avogadro_PLUGIN_INSTALL_DIR@")
-+set(Avogadro_BIN_DIRS        "@CMAKE_INSTALL_PREFIX@/@BIN_INSTALL_DIR@")
- 
- # Tell the user where to find our build settings and library deps
- set(Avogadro_BUILD_SETTINGS_FILE
+diff -ur avogadro-1.0.3/CMakeLists.txt avogadro-1.0.3-mkspecs-dir/CMakeLists.txt
+--- avogadro-1.0.3/CMakeLists.txt	2011-04-25 07:29:58.000000000 +0200
++++ avogadro-1.0.3-mkspecs-dir/CMakeLists.txt	2011-04-27 02:42:26.000000000 +0200
+@@ -491,7 +491,7 @@
+ if(QT_MKSPECS_DIR AND INSTALL_QMAKE_PRF)
+     install(FILES
+       "${CMAKE_CURRENT_BINARY_DIR}/avogadro.prf"
+-      DESTINATION "${CMAKE_INSTALL_PREFIX}/${QT_MKSPECS_RELATIVE}/features"
++      DESTINATION "${QT_MKSPECS_DIR}/features"
+     )
+ else(QT_MKSPECS_DIR AND INSTALL_QMAKE_PRF)
+   message(WARNING "Qt mkspecs directory not found. File 'avogadro.prf' will be installed to ${SHARE_INSTALL_PREFIX}/avogadro/qmake.")
+diff -ur avogadro-1.0.3/CMakeLists.txt avogadro-1.0.3-no-strip/CMakeLists.txt
+--- avogadro-1.0.3/CMakeLists.txt	2011-04-25 07:29:58.000000000 +0200
++++ avogadro-1.0.3-no-strip/CMakeLists.txt	2011-04-27 18:44:02.000000000 +0200
+@@ -98,7 +98,7 @@
+ 	endif (NOT APPLE)
+   # Set up additional build flags for particular build types. These will be added to CMAKE_CXX_FLAGS,
+   # they will not replace them.
+-  set(CMAKE_CXX_FLAGS_RELEASE "-O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,-s")
++  set(CMAKE_CXX_FLAGS_RELEASE "-O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT")
+   set(CMAKE_CXX_FLAGS_RELWITHDEBINFO
+     "${CMAKE_CXX_FLAGS_RELWITHDEBINFO} ${CMAKE_CXX_FLAGS_WARN}")
+   set(CMAKE_CXX_FLAGS_DEBUG   "-g3 -fno-inline ${CMAKE_CXX_FLAGS_WARN}")