[packages/R-GenomicRanges] - new, based on fedora

[baggins]

commit 701d22fd05bc84bf20648c2ef8d2e019b74aff7c
Author: Jan Rękorajski <baggins at pld-linux.org>
Date:   Thu Oct 18 13:19:05 2012 +0200

    - new, based on fedora

 R-GenomicRanges.spec | 59 ++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 59 insertions(+)
---
diff --git a/R-GenomicRanges.spec b/R-GenomicRanges.spec
new file mode 100644
index 0000000..c84e514
--- /dev/null
+++ b/R-GenomicRanges.spec
@@ -0,0 +1,59 @@
+%define		packname	GenomicRanges
+
+Summary:	Representation and manipulation of genomic intervals
+Name:		R-%{packname}
+Version:	1.10.2
+Release:	1
+License:	Artistic 2.0
+Group:		Applications/Math
+Source0:	http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5:	04ab6f7c7a9abe309e586193e07415d0
+URL:		http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html
+BuildRequires:	R
+BuildRequires:	R-BiocGenerics
+BuildRequires:	R-IRanges-devel >= 1.11.26
+BuildRequires:	texlive-latex
+Requires:	R
+Requires:	R-BiocGenerics
+Requires:	R-IRanges >= 1.11.26
+BuildRoot:	%{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+The ability to efficiently store genomic annotations and alignments is
+playing a central role when it comes to analyze high-throughput
+sequencing data (a.k.a. NGS data). The package defines general purpose
+containers for storing genomic intervals as well as more specialized
+containers for storing alignments against a reference genome.
+
+%prep
+%setup -q -c -n %{packname}
+
+%build
+# circular dep on R-Rsamtools
+#{_bindir}/R CMD build %{packname}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}/
+%doc %{_libdir}/R/library/%{packname}/doc/
+%doc %{_libdir}/R/library/%{packname}/html/
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/extdata/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/scripts/
+%{_libdir}/R/library/%{packname}/unitTests/
+%{_libdir}/R/library/%{packname}/libs/
================================================================

---- gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-GenomicRanges.git/commitdiff/701d22fd05bc84bf20648c2ef8d2e019b74aff7c