[packages/R-biomaRt] - new

[baggins]

commit 719c3884a0ce19734b94ef006cf05bdf0ebca560
Author: Jan Rękorajski <baggins at pld-linux.org>
Date:   Thu Oct 18 14:23:19 2012 +0200

    - new

 R-biomaRt.spec | 62 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 62 insertions(+)
---
diff --git a/R-biomaRt.spec b/R-biomaRt.spec
new file mode 100644
index 0000000..f901e1d
--- /dev/null
+++ b/R-biomaRt.spec
@@ -0,0 +1,62 @@
+%define		packname	biomaRt
+
+Summary:	R Interface to BioMart databases
+Name:		R-%{packname}
+Version:	2.14.0
+Release:	1
+License:	Artistic 2.0
+Group:		X11/Applications
+Source0:	http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5:	b428114e02b5f8d34ff541e86c7b0fd5
+URL:		http://www.bioconductor.org/packages/release/bioc/html/biomaRt.html
+BuildRequires:	R-cran-RCurl
+BuildRequires:	R-cran-XML
+BuildRequires:	R
+BuildRequires:	texlive-latex
+Requires:	R-cran-RCurl
+Requires:	R-cran-XML
+Requires:	R
+BuildRoot:	%{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+In recent years a wealth of biological data has become available in
+public data repositories. Easy access to these valuable data resources
+and firm integration with data analysis is needed for comprehensive
+bioinformatics data analysis. biomaRt provides an interface to a
+growing collection of databases implementing the BioMart software
+suite (http://www.biomart.org). The package enables retrieval of large
+amounts of data in a uniform way without the need to know the
+underlying database schemas or write complex SQL queries. Examples of
+BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene,
+Wormbase and dbSNP mapped to Ensembl. These major databases give
+biomaRt users direct access to a diverse set of data and enable a wide
+range of powerful online queries from gene annotation to database
+mining.
+
+%prep
+%setup -c -q -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%{_bindir}/R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}/
+%doc %{_libdir}/R/library/%{packname}/doc/
+%doc %{_libdir}/R/library/%{packname}/html/
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/CITATION
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/scripts/
================================================================

---- gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-biomaRt.git/commitdiff/719c3884a0ce19734b94ef006cf05bdf0ebca560