[packages/R-BSgenome.Hsapiens.UCSC.hg19] - new

[baggins]

commit cc8aff61da6c613cc610b5c8c88b31aaf1512510
Author: Jan Rękorajski <baggins at pld-linux.org>
Date:   Fri Mar 22 12:35:01 2013 +0100

    - new

 R-BSgenome.Hsapiens.UCSC.hg19.spec | 61 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 61 insertions(+)
---
diff --git a/R-BSgenome.Hsapiens.UCSC.hg19.spec b/R-BSgenome.Hsapiens.UCSC.hg19.spec
new file mode 100644
index 0000000..aa08e40
--- /dev/null
+++ b/R-BSgenome.Hsapiens.UCSC.hg19.spec
@@ -0,0 +1,61 @@
+# NOTE: this package is NoSource because the file is _enormous_,
+#	and I don't want to pollute distfiles with it - baggins
+
+%define		packname	BSgenome.Hsapiens.UCSC.hg19
+
+Summary:	Homo sapiens (Human) full genome (UCSC version hg19)
+Name:		R-%{packname}
+Version:	1.3.19
+Release:	1
+License:	Artistic 2.0
+Group:		Applications/Science
+Source0:	http://bioconductor.org/packages/release/data/annotation/src/contrib//%{packname}_%{version}.tar.gz
+# NoSource0-md5:	d8cc70ba24b9c320ca45c3dc56f5f9b2
+NoSource:	0
+URL:		http://bioconductor.org/packages/release/bioc/html/Biobase.html
+BuildRequires:	R
+BuildRequires:	R-BSgenome >= 1.25.4
+BuildRequires:	texlive-latex
+Requires:	R
+Requires:	R-BSgenome >= 1.25.4
+BuildRoot:	%{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Homo sapiens (Human) full genome as provided by UCSC (hg19, Feb. 2009)
+and stored in Biostrings objects.
+
+%prep
+%setup -c -q -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/libs/
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/UnitTests/
+%{_libdir}/R/library/%{packname}/data
+%{_libdir}/R/library/%{packname}/scripts
+%{_libdir}/R/library/%{packname}/ExpressionSet
+%{_libdir}/R/library/%{packname}/CITATION
+%{_libdir}/R/library/%{packname}/Code
+%{_libdir}/R/library/%{packname}/extdata
+%{_libdir}/R/library/%{packname}/testClass.R
+%{_libdir}/R/library/%{packname}/NEWS
+%doc %{_libdir}/R/library/%{packname}/doc
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/html
================================================================

---- gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-BSgenome.Hsapiens.UCSC.hg19.git/commitdiff/cc8aff61da6c613cc610b5c8c88b31aaf1512510