[packages/R-GenomicFeatures] - new

[baggins]

commit a02be990c59888e3b9d9261c3c0036140f22a1d0
Author: Jan Rękorajski <baggins at pld-linux.org>
Date:   Fri May 10 14:53:11 2013 +0200

    - new

 R-GenomicFeatures.spec | 72 ++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 72 insertions(+)
---
diff --git a/R-GenomicFeatures.spec b/R-GenomicFeatures.spec
new file mode 100644
index 0000000..9db4881
--- /dev/null
+++ b/R-GenomicFeatures.spec
@@ -0,0 +1,72 @@
+%define		packname	GenomicFeatures
+
+Summary:	Tools for making and manipulating transcript centric annotations
+Name:		R-%{packname}
+Version:	1.12.1
+Release:	1
+License:	Artistic 2.0
+Group:		Applications/Math
+Source0:	http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5:	b9cfb7e3d3c32092834a9fbd5a4de212
+URL:		http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html
+BuildRequires:	R
+BuildRequires:	R-AnnotationDbi >= 1.19.36
+BuildRequires:	R-BiocGenerics
+BuildRequires:	R-GenomicRanges >= 1.11.11
+BuildRequires:	R-IRanges-devel >= 1.17.13
+BuildRequires:	R-Biostrings
+BuildRequires:	R-rtracklayer
+BuildRequires:	R-biomaRt
+BuildRequires:	R-cran-RCurl
+BuildRequires:	texlive-latex
+Requires:	R
+Requires:	R-AnnotationDbi >= 1.19.36
+Requires:	R-BiocGenerics
+Requires:	R-GenomicRanges >= 1.11.11
+Requires:	R-IRanges >= 1.17.13
+Requires:	R-Biostrings
+Requires:	R-rtracklayer
+Requires:	R-biomaRt
+Requires:	R-cran-RCurl
+BuildRoot:	%{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+A set of tools and methods for making and manipulating transcript
+centric annotations. With these tools the user can easily download
+the genomic locations of the transcripts, exons and cds of a given
+organism, from either the UCSC Genome Browser or a BioMart database
+(more sources will be supported in the future). This information is
+then stored in a local database that keeps track of the relationship
+between transcripts, exons, cds and genes. Flexible methods are
+provided for extracting the desired features in a convenient format.
+
+%prep
+%setup -q -c -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}/
+%doc %{_libdir}/R/library/%{packname}/doc/
+%doc %{_libdir}/R/library/%{packname}/html/
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/extdata/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/unitTests/
+%{_libdir}/R/library/%{packname}/script
+%{_libdir}/R/library/%{packname}/txdb-template
================================================================

---- gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-GenomicFeatures.git/commitdiff/a02be990c59888e3b9d9261c3c0036140f22a1d0