[packages/R-Gviz] - new

[baggins]

commit 14195db77bc62a65410abd60f66538203d3bd137
Author: Jan Rękorajski <baggins at pld-linux.org>
Date:   Fri Nov 29 13:12:28 2013 +0100

    - new

 R-Gviz.spec | 58 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 58 insertions(+)
---
diff --git a/R-Gviz.spec b/R-Gviz.spec
new file mode 100644
index 0000000..fb7c15d
--- /dev/null
+++ b/R-Gviz.spec
@@ -0,0 +1,58 @@
+%define		packname	Gviz
+
+Summary:	Plotting data and annotation information along genomic coordinates
+Name:		R-%{packname}
+Version:	1.6.0
+Release:	1
+License:	Artistic 2.0
+Group:		X11/Applications
+Source0:	http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5:	0bcff07c6791c32fce881bc3991ff0f7
+URL:		http://www.bioconductor.org/packages/release/bioc/html/Gviz.html
+BuildRequires:	R
+BuildRequires:	R-biovizBase
+BuildRequires:	R-cran-latticeExtra
+BuildRequires:	texlive-latex
+Requires:	R
+Requires:	R-biovizBase
+Requires:	R-cran-latticeExtra
+BuildRoot:	%{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Genomic data analyses requires integrated visualization of known
+genomic information and new experimental data. Gviz uses the biomaRt
+and the rtracklayer packages to perform live annotation queries to
+Ensembl and UCSC and translates this to e.g. gene/transcript
+structures in viewports of the grid graphics package. This results in
+genomic information plotted together with your data.
+
+%prep
+%setup -c -q -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%{_bindir}/R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}/
+%doc %{_libdir}/R/library/%{packname}/doc/
+%doc %{_libdir}/R/library/%{packname}/html/
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/data/
+%{_libdir}/R/library/%{packname}/extdata/
+%{_libdir}/R/library/%{packname}/lib/
+%{_libdir}/R/library/%{packname}/scripts/
================================================================

---- gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-Gviz.git/commitdiff/14195db77bc62a65410abd60f66538203d3bd137